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2024
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138
Olga Borisovna Botvinnik, Venkata Naga Pranathi Vemuri, N. Tessa Pierce, Phoenix Aja Logan, Saba Nafees, Lekha Karanam, Kyle Joseph Travaglini, Camille Sophie Ezran, Lili Ren, Yanyi Huang, Jianwei Wang, Jianbin Wang, C. Titus Brown.
Single-cell transcriptomics for the 99.9% of species without reference genomes.
BioRxiv posted online on July 10, 2021 (2024) . doi: 10.1101/2021.07.09.450799
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137
Feng Tian, Fan Zhou, Xiang Li, Wenping Ma, Honggui Wu, Ming Yang, Alec R. Chapman, David F. Lee, Longzhi Tan, Dong Xing, Guangjun Yin, Ayjan Semayel, Jing Wang, Jia Wang, Wenjie Sun, Runsheng He, Siwei Zhang, Zhejie Cao, Lin Wei, Shen Lu, Dechang Yang, Yunuo Mao, Yuan Gao, Kexuan Chen, Yu Zhang, Xixi Liu, Jun Yong, Liying Yan, Yanyi Huang, Jie Qiao,* Fuchou Tang,* Ge Gao,* X. Sunney Xie*.
Genomic Architecture of Cells in Tissues (GeACT): Study of Human Mid-gestation Fetus.
bioRxiv posted online on April 12, 2020 (2024) . doi: 10.1101/2020.04.12.038000
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136
Lili Ren, Chao Wu, Li Guo, Jiacheng Yao, Conghui Wang, Yan Xiao, Angela Oliveira Pisco, Zhiqiang Wu, Xiaobo Lei, Yiwei Liu, Leisheng Shi, Lianlian Han, Hu Zhang, Xia Xiao, Jingchuan Zhong, Hongping Wu, Mingkun Li, Stephen R. Quake, Yanyi Huang, Jianbin Wang, Jianwei Wang.
bioRxiv posted online on June 30, 2020 (2024) . doi: 10.1101/2020.06.30.175778
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2023
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134
Xin Sun, Yue-Chen Liu, Mikhail P Tiunov, Dmitry O Gimranov, Yan Zhuang, Yu Han, Carlos A Driscoll, Yuhong Pang, Chunmei Li, Yan Pan, Marcela Sandoval Velasco, Shyam Gopalakrishnan, Rui-Zheng Yang, Bao-Guo Li, Kun Jin, Xiao Xu, Olga Uphyrkina, Yanyi Huang, Xiao-Hong Wu, M Thomas P Gilbert, Stephen J O’Brien, Nobuyuki Yamaguchi, Shu-Jin Luo. .
Ancient DNA reveals genetic admixture in China during tiger evolution. .
Nature Ecology & Evolution 7 (11), 1914-1929 (2023) . doi: 10.1038/s41559-023-02185-8
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133
Tianyi Chang, Wuji Han, Mengcheng Jiang, Jizhou Li, Zhizhao Liao, Mingchuan Tang, Jianyun Zhang, Jie Shen, Zitian Chen, Peng Fei, Xianwen Ren, Yuhong Pang, Guanbo Wang, Jianbin Wang,* Yanyi Huang.*.
Rapid and Signal Crowdedness-Robust In-Situ Sequencing through Hybrid Block Coding.
Proceedings of the National Academy of Sciences of the United States of America 120 (47), e2309227120 (2023) . doi: 10.1073/pnas.2309227120
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132
Mengyu Guo, Muya Xiong, Jinying Peng, Tong Guan, Haixia Su, Yanyi Huang, Cai-Guang Yang, Yang Li, Diana Boraschi, Thanigaimalai Pillaiyar, Guanbo Wang, Chengqi Yi, Yechun Xu, Chunying Chen..
Multi-omics in COVID-19: Driving development of therapeutics and vaccines..
National Science Review 10 (9), nwad161 (2023) . doi: 10.1093/nsr/nwad161
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131
Yueying He, Yue Xue, Jingyao Wang, Yupeng Huang, Lu Liu, Yanyi Huang,* Yi Qin Gao*.
Genome Research 33 (8), 1354-1368 (2023) . doi: 10.1101/gr.277737.123
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129
Jiarui Li, Qiuyu Jing, Jie Li, Mingxi Hua, Lin Di, Chuan Song, Yanyi Huang, Jianbin Wang, Chen Chen, Angela Ruohao Wu. .
Microbiome 11 38 (2023) . doi: 10.1186/s40168-022-01447-0
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Chongwei Bi, Lin Wang, Yong Fan, Baolei Yuan, Samhan Alsolami, Yingzi Zhang, Pu-Yao Zhang, Yanyi Huang, Yang Yu, Juan Carlos Izpisua Belmonte, Mo Li. .
Nucleic Acids Research 51 (8), 3793-3805 (2023) . doi: 10.1093/nar/gkad209
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125
Chongwei Bi, Lin Wang, Yong Fan, Baolei Yuan, Gerardo Ramos-Mandujano, Yingzi Zhang, Samhan Alsolami, Xuan Zhou, Jincheng Wang, Yanjiao Shao, Pradeep Reddy, Pu-Yao Zhang, Yanyi Huang, Yang Yu, Juan Carlos Izpisua Belmonte, Mo Li..
Nucleic Acids Research 51 (8), e48 (2023) . doi: 10.1093/nar/gkad208
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2022
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119
Jincheng Wang, Yuchen Sang, Shengxian Jin, Xuezheng Wang, Gajendra Kumar Azad, Mark A. McCormick, Brian K. Kennedy, Qing Li, JianbinWang, Xiannian Zhang,* Yi Zhang,* and Yanyi Huang*.
Single-cell RNA-seq reveals early heterogeneity during ageing in yeast.
Aging Cell 21 e13712 (2022) . doi: 10.1111/acel.13712
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116
Lin Di,# Bo Liu,# Yuzhu Lyu, Shihui Zhao, Yuhong Pang, Chen Zhang, Jianbin Wang,* Hai Qi,* Jie Shen,* Yanyi Huang*.
SHERRY2: A method for rapid and sensitive single cell RNA-seq.
BMC Biology 20 213 (2022) . doi: 10.1186/s12915-022-01416-x
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114
Xiaoming Zhang, Xueping Ji,* Chunmei Li, Tingyu Yang, Jiahui Huang, Yinhui Zhao, Yun Wu, Shiwu Ma, Yuhong Pang, Yanyi Huang, Yaoxi He,* BingSu*.
A Late Pleistocene human genome from Southwest China.
Current Biology 32 (14), 3095-3109 (2022) . doi: 10.1016/j.cub.2022.06.016
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113
Tao Chen,# Chen Cao,# Jianyun Zhang,# Aaron M Streets,* Tiejun Li,* Yanyi Huang*.
PLOS Biology 20 (7), e3001699 (2022) . doi: 10.1371/journal.pbio.3001699
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111
Tianyuan Liu, Xuan Zhao, Yuan Lin, Qi Luo, Shaosen Zhang, Yiyi Xi, Yamei Chen, Lin Lin, Wenyi Fan, Jie Yang, Yuling Ma, Alok K Maity, Yanyi Huang, Jianbin Wang, Jiang Chang,* Dongxin Lin,* Andrew E Teschendorff,* Chen Wu*.
Cancer Research 82 (14), 2520-2537 (2022) . doi: 10.1158/0008-5472.CAN-22-0668
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110
Fang Luo, Wenbin Yang, Mingbo Yin, Xiaojin Mo, Yuhong Pang, Chengsong Sun, Bingkuan Zhu, Wei Zhang, Cun Yi, Zhidan Li, Jipeng Wang, Bin Xu, Zheng Feng, Yanyi Huang, Yan Lu,* Wei Hu*.
Cell Reports 39 (1), 110638 (2022) . doi: 10.1016/j.celrep.2022.110638
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108
Qi Tang,# Lu Liu,# Yilan Guo, Xu Zhang, Shaoran Zhang, Yan Jia, Yifei Du, Bo Cheng, Li Yang,* Yanyi Huang,* Xing Chen*.
Optical Cell Tagging for Spatially Resolved Single‐Cell RNA Sequencing.
Angewandte Chemie Int. Ed. 61 (7), e202113929 (2022) . doi: 10.1002/anie.202113929
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107
Jiarui Li,# Pengcheng Du,# Lijiang Yang,# Ju Zhang,# Chuan Song,# Danying Chen,# Yangzi Song, Nan Ding, Mingxi Hua, Kai Han, Rui Song, Wen Xie, Zhihai Chen, Xianbo Wang, Jingyuan Liu, Yanli Xu, Guiju Gao, Qi Wang, Lin Pu, Lin Di, Jie Li, Jinglin Yue, Junyan Han, Xuesen Zhao, Yonghong Yan, Fengting Yu, Angela R. Wu, Fujie Zhang,* Yi Qin Gao,* Yanyi Huang,* Jianbin Wang,* Hui Zeng,* Chen Chen*.
Two-step fitness selection for intra-host variations in SARS-CoV-2.
Cell Reports 38 110205 (2022) . doi: 10.1016/j.celrep.2021.110205
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106
Lu Liu,# He Chen,# Cheng Sun,# Jianyun Zhang,# Juncheng Wang, Meijie Du, Jie Li, Lin Di, Jie Shen, Shuang Geng, Yuhong Pang, Yingying Luo, Chen Wu, Yusi Fu,* Zhe Zheng,* Jianbin Wang,* Yanyi Huang*.
Genome Research 32 (1), 44-54 (2022) . doi: 10.1101/gr.275453.121
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2021
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105
Lili Ren, Yeming Wang, Jiaxin Zhong, Xia Li, Yan Xiao, Jie Li, Jing Yang, Guohui Fan, Li Guo, Zijie Shen, Lu Kang, Leisheng Shi, Qiong Li, Jizhou Li, Lin Di, Haibo Li, Conghui Wang, Ying Wang, Xinming Wang, Xiaohui Zou, Jian Rao, Li Zhang, Jianbin Wang, Yanyi Huang, Bin Cao, Jianwei Wang, Mingkun Li.
Dynamics of the Upper Respiratory Tract Microbiota and Its Association with Mortality in COVID-19.
Am J Respir Crit Care Med 204 (12), 1379-1390 (2021) . doi: 10.1164/rccm.202103-0814OC
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104
Pengcheng Du, Chuan Song, Rui Li, Yangzi Song, Jiarui Li, Nan Ding, Ju Zhang, Rui Song, Junyan Han, Guiju Gao, Jinglin Yue, Ang Duan, Yanyi Huang, Jing An, Jianbin Wang,* Fujie Zhang,* Chen Chen,* Hui Zeng*.
Specific re-distribution of SARS-CoV-2 variants in the respiratory system and intestinal tract.
Clinical Infectious Diseases 73 (9), e2814-e2817 (2021) . doi: 10.1093/cid/ciaa1617
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102
Ruoyan Li,# Lin Di,# Jie Li,# Wenyi Fan,# Yachen Liu, Wenjia Guo, Weiling Liu, Lu Liu, Qiong Li, Liping Chen, Yamei Chen, Chuanwang Miao, Hongjin Liu, Yuqian Wang, Yuling Ma, Deshu Xu, Dongxin Lin,* Yanyi Huang,* Jianbin Wang,* Fan Bai,* Chen Wu*.
A body map of somatic mutagenesis in morphologically normal human tissues.
Nature 597 (7876), 398-403 (2021) . doi: 10.1038/s41586-021-03836-1
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101
Xiaotian Li,# Lu Liu,# Jianyun Zhang, Ming Ma, Lisha Sun, Xuefen Li, Heyu Zhang,* Jianbin Wang,* Yanyi Huang,* Tiejun Li*.
Science China Life Sciences 64 (9), 1379-1391 (2021) . doi: 10.1007/s11427-021-1965-x
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100
Ming Ma,# Lu Liu,# Ruirui Shi,# Jianyun Zhang, Xiaotian Li, Xuefen Li, Jiaying Bai, Jianbin Wang,* Yanyi Huang,* Tiejun Li*.
International Journal of Oral Science 13 21 (2021) . doi: 10.1038/s41368-021-00127-3
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98
Wenxiong Zhou, Li Kang, Haifeng Duan, Shuo Qiao, Louis Tao, Zitian Chen,* Yanyi Huang*.
A Virtual Sequencer Reveals the Dephasing Patterns in Error-Correction Code DNA Sequencing.
National Science Review 8 (5), nwaa227 (2021) . doi: 10.1093/nsr/nwaa227
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97
Yongxi Zhao, Xiaolei Zuo, Qian Li, Feng Chen, Yan-Ru Chen, Jinqi Deng, Da Han, Changlong Hao, Fujian Huang, Yanyi Huang, Guoliang Ke, Hua Kuang, Fan Li, Jiang Li, Min Li, NaLi, Zhenyu Lin, Dingbin Liu, Juewen Liu, Libing Liu, Xiaoguo Liu, Chunhua Lu, Fang Luo, Xiuhai Mao, Jiashu Sun, Bo Tang, Fei Wang, Jianbin Wang, Lihua Wang, Shu Wang, Lingling Wu, Zai-Sheng Wu, Fan Xia, C Xu, Y Yang, B-F Yuan, Q Yuan, C Zhang, Z Zhu, Chaoyong Yang, Xiao-Bing Zhang, Huanghao Yang, Weihong Tan, Chunhai Fan.
Science China Chemistry 64 (2), 171-203 (2021) . doi: 10.1007/s11426-020-9864-7
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2020
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96
Chen Chen,# Jizhou Li,# Lin Di,# Qiuyu Jing,# Pengcheng Du,# Chuan Song, Jiarui Li, Qiong Li, Yunlong Cao, X. Sunney Xie, Angela R. Wu,* Hui Zeng,* Yanyi Huang,* Jianbin Wang* .
MINERVA: A facile strategy for SARS-CoV-2 whole genome deep sequencing of clinical samples.
Molecular Cell 80 (6), 1123-1134 (2020) . doi: 10.1016/j.molcel.2020.11.030
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95
Xinghuo Pang,# Lili Ren,# Shuangsheng Wu,# Wentai Ma,# Jian Yang, Lin Di, Jie Li, Yan Xiao, Lu Kang, Shichang Du, Jing Du, Jing Wang, Gang Li, Shuguang Zhai, Lijuan Chen, Wenxiong Zhou, Shengjie Lai, Lei Gao, Yang Pan,* Quanyi Wang,* Mingkun Li,* Jianbin Wang,* Yanyi Huang,* Jianwei Wang,* COVID-19 Field Response Group, COVID-19 Laboratory Testing Group.
Cold-chain food contamination as the possible origin of Covid-19 resurgence in Beijing.
National Science Review 7 (12), 1861-1864 (2020) . doi: 10.1093/nsr/nwaa264
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94
Pengcheng Du, Nan Ding, Jiarui Li, Fujie Zhang, Qi Wang, Zhihai Chen, Chuan Song, Kai Han, Wen Xie, Jingyuan Liu, Linghang Wang, Lirong Wei, Shanfang Ma, Mingxi Hua, Fengting Yu, Lin Wang, Wei Wang, Kang An, Jianjun Chen, Haizhou Liu, Guiju Gao, Sa Wang, Yanyi Huang, Angela R. Wu, Jianbin Wang,* Di Liu,* Hui Zeng,* and Chen Chen*.
Genomic surveillance of COVID-19 cases in Beijing.
Nature Communications 11 5503 (2020) . doi: 10.1038/s41467-020-19345-0
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92
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90
Liangliang Wang, Yan Gao, Gao Zhang, Dan Li, Zhenda Wang, Jie Zhang, Leandro C. Hermida, Lei He, Zhisong Wang, Jingwen Si, Shuang Geng, Rizi Ai, Fei Ning, Chaoran Cheng, Haiteng Deng, Dimiter S. Dimitrov, Yan Sun, Yanyi Huang, Dong Wang, Xiaoyu Hu, Zhi Wei, Wei Wang, Xuebin Liao.
Enhancing KDM5A and TLR activity improves the response to immune checkpoint blockad.
Science Translational Medicine 12 eaax2282 (2020) . doi: 10.1126/scitranslmed.aax2282
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89
Chongwei Bi, Lin Wang, Baolei Yuan, Xuan Zhou, Yu Li, Sheng Wang, Yuhong Pang, Xin Gao, Yangyi Huang,* Mo Li*.
Long-read Individual-molecule Sequencing Reveals CRISPR-induced Genetic Heterogeneity in Human ESCs.
Genome Biology 21 213 (2020) . doi: 10.1186/s13059-020-02143-8
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85
Juanli Yun, Xiaowei Zheng, Peng Xu, Xu Zheng, Jingyue Xu, Chen Cao, Yusi Fu, Bingxue Xu, Xin Dai, Yi Wang, Hongtao Liu, Qiaolian Yi, Yaxin Zhu, Jian Wang, Li Wang, Zhiyang Dong, Li Huang,* Yanyi Huang,* Wenbin Du*.
Interfacial Nanoinjection-Based Nanoliter Single-Cell Analysis.
Small 16 (9), 1903739 (2020) . doi: 10.1002/smll.201903739
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84
Lin Di,# Yusi Fu,# Yue Sun, Jie Li, Lu Liu, Jiacheng Yao, Guanbo Wang, Yalei Wu, Kaiqin Lao, Raymond W Lee, Genhua Zheng, Jun Xu, Juntaek Oh, Dong Wang, X. Sunney Xie,* Yanyi Huang,* Jianbin Wang*.
RNA Sequencing by Direct Tagmentation of RNA/DNA Hybrids.
Proceedings of the National Academy of Sciences of the United States of America 117 (6), 2886-2893 (2020) . doi: 10.1073/pnas.1919800117
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83
Shuang Geng,# Jing Wang,# Xiannian Zhang,# Jia-jia Zhang, Fan Wu, Yuhong Pang, Yuping Zhong, Jianbin Wang, Wenming Wang, Xiaoqing Lyu, Yanyi Huang,* Hongmei Jing*.
FEBS Letters 594 (3), 452-465 (2020) . doi: 10.1002/1873-3468.13623
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2019
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82
Yusi Fu,# Fangli Zhang,# Xiannian Zhang, Junlong Yin, Meijie Du, Mengcheng Jiang, Lu Liu, Jie Li, Yanyi Huang,* Jianbin Wang*.
High-throughput single-cell whole-genome amplification through centrifugal emulsification and eMDA.
Communications Biology 2 147 (2019) . doi: 10.1038/s42003-019-0401-y
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80
Xiannian Zhang,# Yang Peng,# Chunmei Li,# Qianxi Li, Zhilong Yu, Yuhong Pang, Angela Ruohao Wu, Yanyi Huang,* Hang Li*.
Journal of Investigative Dermatology 139 (7), 1526-1534 (2019) . doi: 10.1016/j.jid.2019.01.019
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79
Dongqing Jiang, Xiannian Zhang, Yuhong Pang, Jianyun Zhang, Jianbin Wang,* Yanyi Huang*.
Protein & Cell 10 (3), 229-233 (2019) . doi: 10.1007/s13238-018-0540-9
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78
Xiannian Zhang,# Tianqi Li,# Feng Liu,# Yaqi Chen,# Jiacheng Yao, Zeyao Li, Yanyi Huang,* Jianbin Wang*.
Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems.
Molecular Cell 73 (1), 130-142 (2019) . doi: 10.1016/j.molcel.2018.10.020
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2018
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77
Shuang Geng and Yanyi Huang*.
Advanced Biosystems 2 (9), 1800099 (2018) . doi: 10.1002/adbi.201800099
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76
Yi Zhang, Jiaxin Gao, Yanyi Huang,* Jianbin Wang*.
Recent developments in single-cell RNA-seq of microorganisms (Perspective).
Biophysical Journal 115 (2), 173-180 (2018) . doi: 10.1016/j.bpj.2018.06.008
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74
He Chen, Jiacheng Yao, Yusi Fu, Yuhong Pang, Jianbin Wang,* Yanyi Huang*.
ACS Applied Materials & Interfaces 10 (14), 11539-11545 (2018) . doi: 10.1021/acsami.8b01560
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-
2017
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73
Zitian Chen, Wenxiong Zhou, Shuo Qiao, Li Kang, Haifeng Duan, X. Sunney Xie, Yanyi Huang*.
Highly accurate fluorogenic DNA sequencing with information theory-based error correction.
Nature Biotechnology 35 (12), 1170-1178 (2017) . doi: 10.1038/nbt.3982
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72
Lingmin Zhang,# Peng Wang,# Qiang Feng, Nuoxin Wang, Zitian Chen, Yanyi Huang, Wenfu Zheng,* Xingyu Jiang*.
Lipid nanoparticle-mediated efficient delivery of CRISPR/Cas9 for tumor therapy.
NPG Asia Materials 9 e441 (2017) . doi: 10.1038/am.2017.185
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68
Peiyu Liao and Yanyi Huang*.
Digital PCR: Endless Frontier of ‘Divide and Conquer’ (Perspective).
Micromachines 8 231 (2017) . doi: 10.3390/mi8080231
( featured as front cover )
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67
Chunmei Li, Zhilong Yu, Yusi Fu, Yuhong Pang, Yanyi Huang*.
ACS Applied Materials & Interfaces 9 (16), 13958-13964 (2017) . doi: 10.1021/acsami.7b03146
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66
Angela R. Wu,* Jianbin Wang,* Aaron M. Streets,* Yanyi Huang*.
Single-Cell Transcriptional Analysis (Review).
Annual Review of Analytical Chemistry 10 439-462 (2017) . doi: 10.1146/annurev-anchem-061516-045228
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65
Lu Yang,# Zhaochun Ma,# Chen Cao,# Yuhao Zhang,# Xinglong Wu,# Raymond Lee, Boqiang Hu, Lu Wen, Hao Ge, Yanyi Huang,* Kaiqin Lao,* Fuchou Tang*.
MR-seq: Measuring a single cell’s transcriptome repeatedly by RNA-seq.
Science Bulleitin 62 (6), 391-398 (2017) . doi: 10.1016/j.scib.2017.01.029
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64
Chunhong Zheng,# Xiannian Zhang,# Chunmei Li, Yuhong Pang,* Yanyi Huang*.
A microfluidic device for studying controllable hydrodynamic flow induced cellular responses.
Analytical Chemistry 89 (6), 3710-3715 (2017) . doi: 10.1021/acs.analchem.7b00013
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62
Zitian Chen, Peiyu Liao, Fangli Zhang, Mengcheng Jiang, Yusen Zhu, Yanyi Huang*.
Centrifugal Micro-Channel Array Droplet Generation for Highly Parallel Digital PCR.
Lab on a Chip 17 (2), 235-240 (2017) . doi: 10.1039/C6LC01305H
( featured as inside front cover )
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-
2016
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61
Yusi Fu, He Chen, Lu Liu, Yanyi Huang*.
Single cell total RNA sequencing through isothermal amplification in picoliter-droplet emulsion.
Analytical Chemistry 88 (22), 10795-10799 (2016) . doi: 10.1021/acs.analchem.6b02581
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60
Zitian Chen, Yusi Fu, Fangli Zhang, Lu Liu, Naiqing Zhang, Dong Zhou, Junrui Yang, Yuhong Pang, Yanyi Huang*.
Spinning micro-pipette liquid emulsion generator for single cell whole genome amplification.
Lab on a Chip 16 (23), 4512-4516 (2016) . doi: 10.1039/C6LC01084A
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58
Yujiao Dang,# Liying Yan,# Boqiang Hu,# Xiaoying Fan, Yixin Ren, Rong Li, Ying Lian, Jie Yan, Qingqing Li, Yan Zhang, Min Li, Xiulian Ren, Jin Huang, Yuqi Wu, Ping Liu, Lu Wen, Chen Zhang, Yanyi Huang,* Fuchou Tang,* Jie Qiao* .
Tracing the expression of circular RNAs in human pre-implantation embryos.
Genome Biology 17 130 (2016) . doi: 10.1186/s13059-016-0991-3
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56
Yu Hou,# Huahu Guo,# Chen Cao, Xianlong Li, Boqiang Hu, Ping Zhu, Xinglong Wu, Lu Wen, Fuchou Tang,* Yanyi Huang,* Jirun Peng*.
Cell Research 26 (3), 304-319 (2016) . doi: 10.1038/cr.2016.23
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2015
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55
Gang Li,# Wenlu Zheng,# Zitian Chen,# Yu Zhou, Yu Liu, Junrui Yang, Yanyi Huang, Xiaoyu Li* .
Design, Preparation, and Selection of DNA-encoded Dynamic Libraries.
Chemical Science 6 (12), 7097-7104 (2015) . doi: 10.1039/C5SC02467F
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54
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53
Lu Wen,# Jingyi Li,# Huahu Guo,# Xiaomeng Liu,# Shengmin Zheng, Dafang Zhang, Weihua Zhu, Jianhui Qu, Limin Guo, Dexiao Du, Xiao Jin, Yuhao Zhang, Yun Gao, Jie Shen, Hao Ge, Fuchou Tang,* Yanyi Huang,* Jirun Peng* .
Cell Research 25 (11), 1250-1264 (2015) . doi: 10.1038/cr.2015.126
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50
Yusi Fu, Chunmei Li, Sijia Lu, Wenxiong Zhou, Fuchou Tang, X. Sunney Xie,* Yanyi Huang*.
Uniform and accurate single-cell sequencing based on emulsion whole-genome amplification.
Proceedings of the National Academy of Sciences of the United States of America 112 (38), 11923-11928 (2015) . doi: 10.1073/pnas.1513988112
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49
Xiaoying Fan,# Xiannian Zhang,# Xinglong Wu, Hongshan Guo, Yuqiong Hu, Fuchou Tang,* Yanyi Huang*.
Genome Biology 16 148 (2015) . doi: 10.1186/s13059-015-0706-1
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47
Zitian Chen, Haifeng Duan,* Shuo Qiao, Wenxiong Zhou, Haiwei Qiu, Li Kang, X. Sunney Xie, Yanyi Huang*.
Fluorogenic Sequencing Using Halogen-fluorescein Labeled Nucleotides.
ChemBioChem 16 (8), 1153-1157 (2015) . doi: 10.1002/cbic.201500117
( Featured as Front Cover )
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43
Jie Shen,# Dongqing Jiang,# Yusi Fu,# Xinglong Wu,# Hongshan Guo, Binxiao Feng, Yuhong Pang, Aaron M. Streets, Fuchou Tang,* Yanyi Huang*.
H3K4me3 epigenomic landscape derived from ChIP-Seq of 1,000 mouse early embryonic cells.
Cell Research 25 (1), 143-147 (2015) . doi: 10.1038/cr.2014.119
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42
Yinqiu Cui, Li Song, Dong Wei, Yuhong Pang, Ning Wang, Chao Ning, Chunmei Li, Binxiao Feng, Wentao Tang, Hongjie Li, Yashan Ren, Chunchang Zhang, Yanyi Huang,* Yaowu Hu,* Hui Zhou*.
Philosophical Transactions of the Royal Society B 370 (1660), 20130378 (2015) . doi: 10.1098/rstb.2013.0378
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2014
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41
Aaron M. Streets and Yanyi Huang*.
How deep is enough in single-cell RNA-seq? (Commentary).
Nature Biotechnology 32 (10), 1005-1006 (2014) . doi: 10.1038/nbt.3039
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40
Zhilong Yu, Sijia Lu, Yanyi Huang*.
Microfluidic Whole Genome Amplification Device for Single Cell Sequencing.
Analytical Chemistry 86 (19), 9386-9390 (2014) . doi: 10.1021/ac5032176
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39
Cheng Cao, Peng Zhao, Ze Li, Zitian Chen, Yanyi Huang, Yu Bai,* Xiaoyu Li*.
DNA-Templated Synthesis of Encoded Small Molecules by DNA Self-Assembly.
Chemical Communications 50 (75), 10997-10999 (2014) . doi: 10.1039/C4CC03380A
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36
Peng Zhao, Zitian Chen, Yizhou Li, Dawei Sun, Yuan Gao, Yanyi Huang,* Xiaoyu Li*.
Angewandte Chemie Int. Ed. 53 (38), 10056-10059 (2014) . doi: 10.1002/anie.201404830
( Featured as Front Cover )
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32
Aaron M. Streets,# Xiannian Zhang,# Chen Cao, Yuhong Pang, Xinglong Wu, Liang Xiong, Lu Yang, Yusi Fu, Liang Zhao,* Fuchou Tang,* Yanyi Huang*.
Microfluidic single-cell whole transcriptome sequencing.
Proceedings of the National Academy of Sciences of the United States of America 111 (19), 7048-7053 (2014) . doi: 10.1073/pnas.1402030111
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30
Yuexin Zhou,# Shiyou Zhu,# Changzu Cai,# Pengfei Yuan, Chunmei Li, Yanyi Huang, Wensheng Wei*.
High-throughput screening of a CRISPR/Cas9 library for functional genomics in human cells.
Nature 509 (7501), 487-491 (2014) . doi: 10.1038/nature13166
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2012
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19
Yongfan Men, Yusi Fu, Zitian Chen, Peter A. Sims, William J. Greenleaf, Yanyi Huang*.
Digital polymerase chain reaction in an array of femtoliter PDMS microreactors.
Analytical Chemistry 84 (10), 4262-4266 (2012) . doi: 10.1021/ac300761n
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